StepWise USMLE
anatomy & physiology

Thorax & Respiratory System

Integrated notes for USMLE Step 1

🔬 histology 🧬 embryology 🫁 lung anatomy ⚕️ clinical

🫀 Chest wall & mammary gland

Mammary gland – modified sweat gland, subcutaneous. Fat determines size/shape. Suspensory (Cooper) ligaments attach skin to deep fascia; tumor infiltration causes skin dimpling (peau d'orange).

Vascular supply

  • Internal thoracic artery (subclavian branch) → medial breast.
  • Lateral thoracic artery (axillary branch) → lateral breast, runs with long thoracic nerve (superficial to serratus anterior).

Lymphatic drainage (key for metastasis)

  • 75% → axillary nodes (especially pectoral group) from nipple & upper/lateral/inferior quadrants.
  • Medial quadrant → parasternal nodes (along internal thoracic vessels); can spread to contralateral breast.
Clinical During radical mastectomy, long thoracic nerve injury → winged scapula + weakness in arm abduction above 90°. Thoracodorsal nerve damage → weakness in extension & medial rotation of arm.

🧬 Embryology – lower respiratory system

Timeline & origin

  • Week 4: respiratory (laryngotracheal) diverticulum from ventral foregut endoderm.
  • Endoderm → epithelium; mesoderm → cartilage, muscle, CT.
  • Distal enlargement → lung bud → bifurcation into 2 bronchial buds → branching to main, secondary, tertiary bronchi by month 6.
  • Tertiary bronchi correspond to bronchopulmonary segments.

Tracheoesophageal septum

  • Separates trachea from esophagus.
  • Defective septum → tracheoesophageal fistula (most common: distal third of trachea to esophagus).
  • Associated with esophageal atresia, polyhydramnios, regurgitation, choking/cyanosis after feeding, abdominal distention, pneumonitis.
⚠️ Pulmonary hypoplasia causes: congenital diaphragmatic hernia (left lung affected) & bilateral renal agenesis (oligohydramnios → Potter sequence).

🫁 Pleura & pleural cavity

Serous membranes: parietal (outer) and visceral (inner). Pleural cavity = potential space with thin serous fluid for friction-free movement.

Parietal pleura – regional parts

  • Costal – lines ribs & intercostal spaces.
  • Diaphragmatic – covers thoracic surface of diaphragm.
  • Mediastinal – covers mediastinum, reflects at hilum to become visceral.
  • Cervical – extends above 1st rib (cupula).

Innervation

  • Parietal: intercostal nerves (costal & peripheral diaphragmatic) → local dermatomal pain.
  • Central diaphragmatic & mediastinal pleura: phrenic nerve (C3–C5) → referred shoulder pain.
  • Visceral pleura: autonomic visceral afferents.

Pleural reflections & recesses

  • Sternal reflection: costal → mediastinal (costal cartilages 2–4).
  • Costodiaphragmatic recess: space between costal & diaphragmatic pleura, lungs do not occupy except deep inspiration.
  • Costomediastinal recess: left side, due to cardiac notch; occupied by lingula during inspiration.
LandmarkVisceral pleura (lung)Parietal pleura
Midclavicular6th rib8th rib
Midaxillary8th rib10th rib
Paravertebral10th rib12th rib
Pneumothorax Open: air enters via chest wall wound, mediastinum shifts away during inspiration, back during expiration. Tension: flap-valve mechanism, air trapped → mediastinal shift worsens, compresses opposite lung & reduces venous return – life-threatening.

Lungs – surfaces, lobes, lymph

Surfaces

  • Costal – smooth, convex, adjacent to ribs.
  • Mediastinal – concave, contains hilum and cardiac impression (deeper on left).
  • Diaphragmatic (base) – rests on diaphragm; right side higher due to liver.

Lobes & fissures

  • Right lung: 3 lobes (superior, middle, inferior) – horizontal & oblique fissures.
  • Left lung: 2 lobes (superior, inferior) – oblique fissure; lingula corresponds to right middle lobe.

Lymphatic drainage

  • Superficial plexus (under visceral pleura) & deep plexus (along bronchi).
  • Bronchopulmonary (hilar) nodes → receive from both plexuses.
  • Tracheobronchial nodes → at bifurcation → bronchiomediastinal trunks.
  • Left lower lobe can drain to right bronchiomediastinal trunk → right lymphatic duct (important for metastasis).
High yield Right main bronchus is shorter, wider, more vertical → aspirated foreign bodies more often enter right lung (posterior basal segment of inferior lobe).

Pancoast tumor

Apical lung tumor → thoracic outlet syndrome (compression of subclavian vessels/brachial plexus).

🔬 Respiratory histology

Lung surface area ~120 m². Air-blood barrier: surfactant + type I pneumocyte + shared basal lamina + capillary endothelium (thickness ~0.1–0.5 µm).

Trachea & bronchi – epithelium

  • Pseudostratified ciliated columnar with goblet cells (mucous), basal cells (stem cells), brush cells, neuroendocrine (Kulchitsky) cells.
  • Cilia beat to move mucous toward pharynx (mucociliary escalator).
  • Goblet cells & submucosal glands produce mucous; traps dust/pathogens.
⚠️ Cystic fibrosis: thick mucous due to defective chloride transport → impaired mucociliary clearance → recurrent infections.

Bronchioles

  • No cartilage, no glands. Epithelium: ciliated simple cuboidal/columnar.
  • Clara cells (bronchiolar secretory): nonciliated, secrete surfactant-like fluid, detoxify, stem cells; abundant in terminal bronchioles (~80% of cells).
  • Terminal bronchioles → last conducting airways; then respiratory bronchioles (with alveoli in walls) → alveolar ducts & sacs.
COPD Emphysema (loss of elastic fibers) vs asthma (reversible airway narrowing). Emphysema – irreversible; asthma – reversible.

Trachea, bronchi & bronchioles – structural comparison

FeatureTracheaBronchiBronchioles
EpitheliumPseudostratified ciliated columnar, goblet cellsPseudostratified → simple columnarSimple cuboidal/columnar, ciliated + Clara cells
Cartilage16–20 C-shaped ringsIrregular platesNone
GlandsSeromucousFewer seromucousNone
Smooth muscleBetween open ends of C-ringsProminentHighest proportion (elastic fibers)

Epithelial cell types

  • Columnar – 200–300 cilia, microvilli.
  • Goblet – secrete mucin.
  • Basal – stem cells.
  • Neuroendocrine (Kulchitsky) – APUD, DNES; at airway branch points; can give rise to bronchial carcinoid.
Squamous metaplasia Chronic irritation (smoking) → ciliated columnar → squamous (reversible if stimulus removed). Kartagener syndrome – dynein defect → immotile cilia → recurrent respiratory infections, male infertility.

Alveolar ducts, sacs & alveoli

Alveoli constitute 80–85% lung volume. ~300 million alveoli, each ~200 µm diameter.

Type I pneumocytes

  • Cover 90–95% of alveolar surface, but only 40% of cells.
  • Very thin (squamous) – main site of gas exchange.
  • Post-mitotic (cannot divide).

Type II pneumocytes

  • 60% of cells, cover 5–10% of surface.
  • Produce surfactant (phospholipid/protein mixture) that reduces surface tension, prevents alveolar collapse.
  • Stem cells for type I & type II.
  • Contain lamellar bodies (myelin figures).
Alveolar wall – rich capillary network (pulmonary arteries). Contains fibroblasts, macrophages, myofibroblasts, mast cells. Collagen (type I in bronchi/bronchioles) & elastic fibers (recoil). Pores of Kohn – collateral ventilation (10–15 µm).
Alveolar air → Surfactant → Type I cell → Basal lamina (shared) → Capillary endothelium → Blood
Respiratory distress syndrome Surfactant deficiency (prematurity, maternal diabetes, asphyxia). Leads to atelectasis, hyaline membrane disease (eosinophilic fluid). Corticosteroids accelerate surfactant synthesis; insulin antagonizes this effect.

⚕️ Clinical pearls & high-yield summary

Intercostal spaces

  • VAN (vein–artery–nerve) in costal groove; nerve inferior.
  • Thoracentesis: lower part of space to avoid neurovascular bundle.
  • Intercostal nerve block: upper part of space.

Diaphragm & pleura

  • Central diaphragmatic pleura innervated by phrenic nerve (C3–C5) → referred shoulder pain.
  • Costal pleura → intercostal nerves → local chest pain.

Embryology recall

  • Tracheoesophageal fistula: most common type (90%) – distal esophagus to trachea.
  • Congenital diaphragmatic hernia → left lung hypoplasia.
  • Bilateral renal agenesis → oligohydramnios → Potter sequence → pulmonary hypoplasia.

Lung auscultation

  • Upper lobes: anterior chest above 4th rib (right) / left similar.
  • Right middle lobe: anterior chest below 4th rib, medial.
  • Inferior lobes: posterior chest.
High-yield facts
  • Pancoast tumor – apical lung cancer → Horner syndrome (if sympathetic chain involved) + thoracic outlet.
  • Mesothelioma – malignant pleural tumor linked to asbestos.
  • Kulchitsky cells – neuroendocrine → carcinoid tumors (bronchial carcinoid).
  • Clara cells – stem cells, detoxification, chloride transport; defective in cystic fibrosis.
  • Emphysema – loss of elastic fibers → air trapping, irreversible.
  • Asthma – reversible bronchoconstriction.